Update regression tests and defaults

models/rfd3/src/rfd3/inference/input_parsing.py

@@ -179,7 +179,7 @@ class DesignInputSpecification(BaseModel):
     infer_ori_strategy: Optional[str] = Field(None, description="Strategy for inferring origin; `com` or `hotspots`")
     # Additional global conditioning
     plddt_enhanced: Optional[bool] = Field(True, description="Enable pLDDT enhancement")
-    is_non_loopy: Optional[bool] = Field(True, description="Non-loopy conditioning")
+    is_non_loopy: Optional[bool] = Field(None, description="Non-loopy conditioning")
     # Partial diffusion
     partial_t: Optional[float] = Field(None, ge=0.0, description="Angstroms of noise to add for partial diffusion (None turns off partial diffusion), t <= 15 recommended.")
     # fmt: on

models/rfd3/src/rfd3/inference/legacy_input_parsing.py

@@ -429,7 +429,7 @@ def create_atom_array_from_design_specification_legacy(
     symmetry: dict = None,
     # Low-temperature global conditioning args
     plddt_enhanced: bool = True,
-    is_non_loopy: bool | None = True,
+    is_non_loopy: bool | None = None,
     # Partial diff args:
     partial_t: float | None = None,  # Optional noise scale for partial diffusion
     **_,  # dump additional args

models/rfd3/tests/transforms/test_pipeline_regression.py

@@ -180,10 +180,10 @@ def test_atom14_pipeline_regression(
     # Get regression data path using shared logic
     regression_path = _get_regression_data_path(example_name, is_inference, config.name)
 
-    # Uncomment the following lines to create/update the regression data
-    with regression_path.open("wb") as f:
-        pickle.dump(result, f)
-        logger.info(f"Saved regression data to {regression_path}")
+    # # Uncomment the following lines to create/update the regression data
+    # with regression_path.open("wb") as f:
+    #     pickle.dump(result, f)
+    #     logger.info(f"Saved regression data to {regression_path}")
 
     # Load expected result
     with regression_path.open("rb") as f: