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cleanup

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Raktim Mitra
2026-03-28 11:57:37 -07:00
parent b04cc1d727
commit 24e92c0b43
1 changed files with 6 additions and 6 deletions
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models/rfd3/docs/examples/atom23_design.md
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@@ -205,19 +205,19 @@ Ligands (MG, PO4) included in design context
Useful for catalytic residues or structural motifs
## 7. Summary of New Features
## 7. Summary of Features Used
R / D suffix → RNA / DNA specification in contigs
`ss_dbn` → global secondary structure constraint (optional)
`ss_dbn` → global secondary structure constraint
`ss_dbn_dict` → local secondary structure constraints (optional)
`ss_dbn_dict` → local secondary structure constraints
`paired_region_list` → helix-level pairing constraints (optional)
`paired_region_list` → helix-level pairing constraints
`paired_position_list` → base-level pairing constraints (optional)
`paired_position_list` → base-level pairing constraints
ligand + selection options → aptamer design
ligand + selection options → aptamer design
`unindex` → remove residues from indexing