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Fixed broken links in tutorials (#242)
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@@ -174,4 +174,4 @@ You have now set up an RFD3 calculation and successfully ran the inference code
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## References and Further Reading
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- For more information on the different inference settings in RFD3, see {doc}`../input`
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- The calculation presented here was used to benchmark RFdiffusion2, for more information see [Atom-level enzyme active site scaffolding using RFdiffusion2](https://www.nature.com/articles/s41592-025-02975-x)
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- A more thorough discussion of the settings and configuration options in RFD3 can be found [here](../intro_inference_calculations.md)
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- A more thorough discussion of the settings and configuration options in RFD3 can be found {doc}`here <../intro_inference_calculations>`
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@@ -211,5 +211,5 @@ For your actual projects, you would want to filter the designed structures based
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(na-references-and-further-reading)=
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## References and Further Reading
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- For more information on the different inference settings in RFD3, see [input.md](../input.md)
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- A more thorough discussion of the settings and configuration options in RFD3 can be found [here](../intro_inference_calculations.md)
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- For more information on the different inference settings in RFD3, see {doc}`input.md <../input>`
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- A more thorough discussion of the settings and configuration options in RFD3 can be found {doc}`here <../intro_inference_calculations>`
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@@ -154,9 +154,9 @@ Feel free to go through the [other tutorials](https://rosettacommons.github.io/f
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(ppi-references-and-further-reading)=
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## References and Further Reading
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- For more information on the different inference settings in RFD3, see [input.md](input.md)
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- For more information on the different inference settings in RFD3, see {doc}`input.md <../input>`
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- For more information on the example used here, see [*De novo design of protein structure and function with RFdiffusion*](https://www.nature.com/articles/s41586-023-06415-8#Sec12) by Joeseph L. Watson, et. al.
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- A more thorough discussion of the settings and configuration options in RFD3 can be found [here](intro_inference_calculations.md)
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- A more thorough discussion of the settings and configuration options in RFD3 can be found {doc}`here <../intro_inference_calculations>`
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