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Started recreating relevant examples from RFD1

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Rachel Clune
2026-03-12 16:18:02 -07:00
parent 75986084a6
commit 711d950d3d
2 changed files with 14 additions and 0 deletions
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6
models/rfd3/docs/examples/common_design_workflows/design_motifscaffolding.yaml Normal file
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# This example scaffolds site 5 from the RSV-F protein
# Taken from design_motifscaffolding.sh example in the RFdiffusion repository.
design_motifscaffolding:
input: ../../input_pdbs/5TPN.pdb
contig: 10-40,A163-181,10-40

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models/rfd3/docs/examples/common_design_workflows/design_motifscaffolding_inpaintseq.yaml Normal file
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# This example scaffolds site 5 from the RSV-F protein
# This is similar to design_motifscaffolding.yaml but a portion of the motif sequence will be redesigned
motif_scaffolding_inpaintseq:
input_pdb: ../../input_pdbs/5TPN.pdb
contig: 10-40,A163-181,10-40
select_unfixed_sequence: A163-168,A170-171,A179
# might also need to unfix sequences, need to rerun the original example to see what the output is like