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* Uploading and editing the first enzyme design tutorial from the Tutorial Hackathon This tutorial was written by Johannes and Florian and is meant to be an intermediate enzyme design tutorial. * Updated draft of Intermediate Enzyme Design Tutorial * Added explanations for the fixed atom and unfixed motif constraints * Added more detail about the metrics to quickly determine if a design is 'good' * Adding example input and output files - Removal of 1mg5.cif and 1mg5_motif.pdb.cif as they are not necessary for the tutorial. - Creation of an `outputs.zip` that contains example output files for this tutorial - Edits to the tutorial document to point to these files. * Updated description of catalytic structure Updated the description of the catalytic structure to better cite the literature.