mirror of
https://github.com/RosettaCommons/foundry.git
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5a492032d5
* Initial commit of chiral changes Initial checkin of chiral feature code Add chiral metric * Update the way chiral features are incorporated into the model Move initialization to new func use default pytorch reset parameters fix initialization for chirals config rename argument of confidence head fix initialization for chirals * refactor: src nest, rename rf2aa to modelhub * refactor: initial commit without projects * Initial commit of chiral changes * Initial checkin of chiral feature code * Add chiral metric * Remove option for double residual connection. Add kq_norm oiptions to base (20250125) config. * Restoring flag * config * rename argument of confidence head * Update the way chiral features are incorporated into the model * config * rename argument of confidence head * Update the way chiral features are incorporated into the model * Initial commit of chiral changes Initial checkin of chiral feature code Add chiral metric * Update the way chiral features are incorporated into the model Move initialization to new func use default pytorch reset parameters fix initialization for chirals config rename argument of confidence head fix initialization for chirals * refactor: new modelhub --------- Co-authored-by: fdimaio <dimaio@uw.edu> Co-authored-by: HaotianZhangAI4Science <haotianzhang@zju.edu.cn>
99 lines
2.1 KiB
TOML
99 lines
2.1 KiB
TOML
[project]
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name = "modelhub"
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dynamic = ["version"]
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description = "Base repository for models at the University of Washington's Institute for Protein Design"
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readme = "README.md"
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requires-python = ">= 3.10"
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authors = [
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{ name = "Bakerlab", email = "" },
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]
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# Build settings ----------------------------------------------------------------------
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[build-system]
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requires = [
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"hatchling",
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"hatch-vcs == 0.4",
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]
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build-backend = "hatchling.build"
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[tool.hatch.version]
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source = "vcs"
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[tool.hatch.build.hooks.vcs]
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version-file = "src/modelhub/version.py"
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[tool.hatch.metadata]
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allow-direct-references = true
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[tool.hatch.build.targets.wheel]
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packages = ["src/modelhub"]
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# Formatting & linting settings -------------------------------------------------------
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[tool.ruff]
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line-length = 88
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indent-width = 4
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target-version = "py310"
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exclude = [
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".bzr",
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".direnv",
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".eggs",
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".git",
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".git-rewrite",
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".hg",
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".ipynb_checkpoints",
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".mypy_cache",
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".nox",
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".pants.d",
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".pyenv",
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".pytest_cache",
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".pytype",
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".ruff_cache",
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".svn",
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".tox",
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".venv",
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".vscode",
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"__pypackages__",
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"_build",
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"buck-out",
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"build",
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"dist",
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"node_modules",
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"site-packages",
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"env",
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".venv",
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"venv",
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"modelhub",
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]
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[tool.ruff.format]
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# Like Black, use double quotes for strings.
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quote-style = "double"
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# Like Black, indent with spaces, rather than tabs.
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indent-style = "space"
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# Like Black, respect magic trailing commas.
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skip-magic-trailing-comma = false
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# Like Black, automatically detect the appropriate line ending.
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line-ending = "auto"
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# Enable auto-formatting of code examples in docstrings. Markdown,
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# reStructuredText code/literal blocks and doctests are all supported.
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docstring-code-format = true
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docstring-code-line-length = 88
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[tool.ruff.lint]
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# Allow unused variables when underscore-prefixed.
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dummy-variable-rgx = "^(_+|(_+[a-zA-Z0-9_]*[a-zA-Z0-9]+?))$"
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# Avoid linting notebooks
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exclude = ["*.ipynb", "dev.py"]
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# Sort imports
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extend-select = ["I"]
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ignore = [
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"F722", # for jaxtyping shape annotation
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]
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