isosurface params fixes/tweaks

src/apps/state-docs/pd-to-md.ts

@@ -16,6 +16,7 @@ function paramInfo(param: PD.Any, offset: number): string {
         case 'boolean': return 'true/false';
         case 'number': return 'Numeric value';
         case 'converted': return paramInfo(param.converted, offset);
+        case 'conditioned': return getParams(param.conditionParams, offset);
         case 'multi-select': return `Array of ${oToS(param.options)}`;
         case 'color': return 'Color as 0xrrggbb';
         case 'color-scale': return `One of ${oToS(param.options)}`;

src/apps/structure-info/volume.ts

@@ -15,7 +15,7 @@ import { DensityServer_Data_Database } from 'mol-io/reader/cif/schema/density-se
 import { Table } from 'mol-data/db';
 import { StringBuilder } from 'mol-util';
 import { Task } from 'mol-task';
-import { createVolumeIsosurfaceMesh } from 'mol-repr/volume/isosurface-mesh';
+import { createVolumeIsosurfaceMesh } from 'mol-repr/volume/isosurface';
 import { createEmptyTheme } from 'mol-theme/theme';
 
 require('util.promisify').shim();
@@ -39,7 +39,7 @@ function print(data: Volume) {
 }
 
 async function doMesh(data: Volume, filename: string) {
-    const mesh = await Task.create('', runtime => createVolumeIsosurfaceMesh({ runtime }, data.volume, createEmptyTheme(), { isoValue: VolumeIsoValue.calcAbsolute(data.volume.dataStats, 1.5) } )).run();
+    const mesh = await Task.create('', runtime => createVolumeIsosurfaceMesh({ runtime }, data.volume, createEmptyTheme(), { isoValue: VolumeIsoValue.absolute(data.volume.dataStats, 1.5) } )).run();
     console.log({ vc: mesh.vertexCount, tc: mesh.triangleCount });
 
     // Export the mesh in OBJ format.

src/mol-repr/volume/registry.ts

@@ -6,7 +6,7 @@
 
 import { RepresentationProvider, RepresentationRegistry, Representation } from '../representation';
 import { VolumeData } from 'mol-model/volume';
-import { IsosurfaceRepresentationProvider } from './isosurface-mesh';
+import { IsosurfaceRepresentationProvider } from './isosurface';
 import { DirectVolumeRepresentationProvider } from './direct-volume';
 
 export class VolumeRepresentationRegistry extends RepresentationRegistry<VolumeData, Representation.State> {

src/mol-util/param-definition.ts

@@ -203,7 +203,7 @@ export namespace ParamDefinition {
         type: 'conditioned',
         select: Select<string>,
         conditionParams: C
-        conditionForValue(v: T): keyof C 
+        conditionForValue(v: T): keyof C
         conditionedValue(v: T, condition: keyof C): T,
     }
     export function Conditioned<T, P extends Base<T>, C = { [k: string]: P }>(defaultValue: T, conditionParams: C, conditionForValue: (v: T) => keyof C, conditionedValue: (v: T, condition: keyof C) => T): Conditioned<T, P, C> {