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Fix bugs in MMseqs DB script

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This commit is contained in:
Gustaf Ahdritz
2021-11-29 13:53:27 -05:00
parent fdf836f1c8
commit 78e7996227
1 changed files with 2 additions and 2 deletions
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4
scripts/prep_mmseqs_dbs.sh
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@@ -23,14 +23,14 @@ DOWNLOAD_DIR="$1"
for f in $(ls ${DOWNLOAD_DIR}/*.tar.gz)
do
tar --extract --verbose --file="${DOWNLOAD_DIR}/${f}" \
tar --extract --verbose --file="${f}" \
--directory="${DOWNLOAD_DIR}/mmseqs_dbs"
rm "${f}"
BASENAME="$(basename {f%%.*})"
DB_NAME="${BASENAME}_db"
OLD_PWD=$(pwd)
cd "${DOWNLOAD_DIR}/mmseqs_dbs"
mmseqs tar2exprofiledb "${BASENAME}" "${DB_NAME}"
mmseqs tsv2exprofiledb "${BASENAME}" "${DB_NAME}"
mmseqs createindex "${DB_NAME}" "${DOWNLOAD_DIR}/tmp/"
cd "${OLD_PWD}"
done