Jennifer Wei
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65a327053b
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Merge branch 'main' into dependabot/github_actions/actions/setup-python-6
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2025-09-15 11:10:15 +07:00 |
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Jennifer Wei
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ce0029e119
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Merge pull request #550 from aqlaboratory/dependabot/github_actions/actions/checkout-5
Bump actions/checkout from 4 to 5
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2025-09-15 11:09:13 +07:00 |
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dependabot[bot]
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9d8dcc7d05
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Bump actions/setup-python from 5 to 6
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 5 to 6.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](https://github.com/actions/setup-python/compare/v5...v6)
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-version: '6'
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
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2025-09-04 20:18:31 +00:00 |
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dependabot[bot]
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9361292548
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Bump actions/checkout from 4 to 5
Bumps [actions/checkout](https://github.com/actions/checkout) from 4 to 5.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](https://github.com/actions/checkout/compare/v4...v5)
---
updated-dependencies:
- dependency-name: actions/checkout
dependency-version: '5'
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
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2025-08-12 05:04:36 +00:00 |
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Jennifer Wei
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e938c184a2
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Merge pull request #534 from aqlaboratory/pl_upgrades
Update openfold to use pytorch 2 and other updated dependencies
v2.2.0
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2025-04-26 08:31:36 +07:00 |
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jnwei
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c587b06e8a
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add Open In Colab banner to notebook.
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2025-04-25 20:07:32 -05:00 |
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jnwei
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50a2e756e7
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Update OpenFold notebook to updated pytorch2 commit
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2025-04-25 20:02:11 -05:00 |
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Jennifer Wei
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1ffd197489
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Merge pull request #533 from jnwei/pl_upgrades
Update pl_upgrades to use numpy 2 and update other dependencies
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2025-04-26 05:07:47 +07:00 |
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Jennifer Wei
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620a54fb13
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Update amber_minimize.py
small fix to spacing
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2025-04-26 05:06:20 +07:00 |
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Jennifer Wei
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a5433c3af6
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Update config.py
small fix to spacing
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2025-04-26 05:05:25 +07:00 |
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Jennifer Wei
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fe10216190
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update version number.
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2025-04-25 21:59:55 +00:00 |
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Jennifer Wei
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16af434172
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fix inference documentation
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2025-04-25 21:50:42 +00:00 |
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Jennifer Wei
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0672517777
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Update installation docs to build CUDA12 version
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2025-04-25 20:35:25 +00:00 |
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Jennifer Wei
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4312aec6b2
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Add link to issue for deepspeed_evo_attention test.
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2025-04-25 20:31:38 +00:00 |
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Jennifer Wei
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da37880bb7
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Allow numpy>2 and support compute capability >9
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2025-04-24 22:25:20 +00:00 |
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Jennifer Wei
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cb899a5ab4
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Merge pull request #2 from aqlaboratory/pl_upgrades
merge changes from upstream pl_upgrades
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2025-04-25 04:55:51 +07:00 |
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Jennifer Wei
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7e06ed9821
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support openmm>8 and fix tolerance units in amber minimization
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2025-04-24 21:33:53 +00:00 |
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Jennifer Wei
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9caf30ae13
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Change casting for deepspeed compare model test to fp32
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2025-04-24 20:51:34 +00:00 |
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Jennifer Wei
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0c2d455efe
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fix environment to support tests
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2025-04-23 23:47:26 +00:00 |
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Jennifer Wei
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ab4a245985
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Merge branch 'main' into pl_upgrades
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2025-04-23 20:18:29 +00:00 |
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Jennifer Wei
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100a309e01
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Maintainance to pl_upgrades
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2025-04-23 20:13:32 +00:00 |
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Jennifer Wei
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815a042c69
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Merge pull request #516 from nenuadrian/patch-1
Minor typo fix in Installation.md
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2025-02-24 10:36:56 +07:00 |
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Jennifer Wei
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26d1a5dacc
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Merge pull request #520 from etowahadams/etowahadams/update-script
Fix RODA flatten script
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2025-02-24 10:36:34 +07:00 |
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etowahadams
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e8d355874c
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updated script
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2025-02-23 18:52:59 -05:00 |
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Adrian (Mircea) Nenu
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a364defcd2
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Minor typo fix in Installation.md
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2024-12-26 09:50:59 +00:00 |
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Jennifer Wei
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a1192c8d3a
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Merge pull request #505 from etowahadams/update-install
docs: Add env var to install guide
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2024-12-04 15:14:25 +07:00 |
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etowahadams
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56277ea056
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fix: formatting
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2024-11-14 13:56:26 -05:00 |
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etowahadams
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c05a35412f
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fix: formatting
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2024-11-14 13:16:02 -05:00 |
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etowahadams
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f1d0ae7583
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try quotes
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2024-11-14 13:13:22 -05:00 |
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etowahadams
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6a43510aac
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fix: formatting
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2024-11-14 13:12:45 -05:00 |
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etowahadams
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9f09442d0a
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fix: formatting
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2024-11-14 13:10:46 -05:00 |
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etowahadams
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a01a60f754
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docs: env variable
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2024-11-14 13:08:37 -05:00 |
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ljarosch
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e605ec81dd
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Merge pull request #504 from aqlaboratory/revert-502-etowahadams/install-docs
Revert "docs: Add env var instructions to install guide "
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2024-11-14 12:36:56 -05:00 |
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Jennifer Wei
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625ade9196
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Revert "docs: Add env var instructions to install guide "
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2024-11-14 13:35:43 +07:00 |
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Jennifer Wei
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8ece4f3c0b
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Merge pull request #502 from etowahadams/etowahadams/install-docs
docs: Add env var instructions to install guide
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2024-11-14 13:06:45 +07:00 |
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etowahadams
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cde001fc40
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add environment variables
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2024-11-13 11:40:23 -05:00 |
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Jennifer Wei
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b79ca29c39
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Merge pull request #479 from vaclavhanzl/patch-3
Update Installation.md - fix pl_upgrades clone instructions
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2024-11-07 15:42:32 +07:00 |
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Jennifer Wei
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23cf2f6107
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Merge pull request #496 from vaclavhanzl/vh-fix-pl_upgrades-env
Fix pl_upgrades environment (numpy, cuda, gcc)
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2024-11-07 08:48:43 +07:00 |
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Vaclav Hanzl
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6bdbd48fc3
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Fix pl_upgrades enwironment (numpy, cuda, gcc)
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2024-10-22 19:23:05 +02:00 |
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Vaclav Hanzl
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e6ce9c937e
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Update Installation.md - fix pl_upgrades clone instructions
That direct clone of branch url does not work. Replaced it with a proper clone command with -b.
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2024-08-24 18:15:56 +02:00 |
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Jennifer Wei
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6f63267114
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Merge pull request #470 from rkosai/main
Remove unnecessary double-load of config_json.
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2024-07-18 15:29:51 +07:00 |
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Jennifer Wei
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c48f850a98
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Merge pull request #408 from rostro36/main
Add use_custom_templates option
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2024-07-18 15:29:33 +07:00 |
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Jannik Gut
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7d227395d6
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Merge branch 'main' into main
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2024-07-18 03:17:55 +02:00 |
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rostro36
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b38b6078dc
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Change path of Inference.md
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2024-07-18 03:11:16 +02:00 |
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rostro36
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0dafd62baa
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Update documentation.
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2024-07-18 03:01:49 +02:00 |
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Ryan Kosai
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8b5212da72
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Remove unnecessary double-load of config_json.
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2024-07-16 20:48:43 -07:00 |
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Jennifer Wei
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f37d0d964d
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Merge pull request #464 from ljarosch/main
Fix 3-to-1 letter conversion to use extended mapping
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2024-07-08 12:04:25 +07:00 |
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ljarosch
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d3c89fc922
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Fix 3-to-1 letter conversion to use extended mapping
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2024-07-05 22:12:30 -04:00 |
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Jennifer Wei
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f6c875b3c8
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Merge pull request #448 from aqlaboratory/aux_seq_files_update
Update Aux_seq_files.md
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2024-05-23 16:57:46 -05:00 |
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Jennifer Wei
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734ebc4b9f
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Update Aux_seq_files.md
formatting change to file directory structure
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2024-05-23 16:37:39 -05:00 |
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