177 Commits

Author	SHA1	Message	Date
jnwei	11d5fdf45d	Update training OpenFold docs with correct paths.	2024-05-10 17:04:54 +07:00
jnwei	7f8d1246ae	Shorten README.md main page.	2024-05-09 17:18:42 +07:00
Sachin Kadyan	b5db6c3448	Update README to include details for SoloSeq Embeddings	2024-05-09 17:18:42 +07:00
Jennifer Wei	81d817fe68	Update README.md ... fixed a typo in the readme for soloseq params path	2024-02-07 23:02:19 +07:00
Jennifer	e94c97ec2d	Updates to setup.py and README	2024-02-06 02:50:59 -05:00
Jennifer	26d555d5b0	readme and small updates for soloseq support on multimer	2024-02-01 22:53:13 -05:00
jnwei	40f98ff075	Adds an outline to the README	2023-12-20 16:40:54 -05:00
Jennifer Wei	f200562821	Update README.md ... small edits to headers	2023-12-19 17:19:01 -05:00
jnwei	cd54c029f9	[README] Updates inference section to highlight subsections.	2023-12-19 17:09:08 -05:00
Christina Floristean	1606ac0834	Merge branch 'main' into multimer	2023-12-11 10:48:16 -05:00
Christina Floristean	336c899acb	Minor test and README changes	2023-12-08 11:38:36 -05:00
Christina Floristean	9236c1e367	Merge branch 'main' into deepspeed-evo-attention	2023-12-05 08:39:34 -05:00
jnwei	4a50c9c48d	Adds Soloseq parameter download script.	2023-11-29 18:30:19 -05:00
Christina Floristean	5aa549583a	Merge branch 'main' into deepspeed-evo-attention	2023-11-08 13:32:44 -05:00
Christina Floristean	5eacd8b689	Merge branch 'main' into multimer	2023-10-30 16:20:13 -04:00
Christina Floristean	15850092d3	Added multimer inference to README	2023-10-30 16:15:05 -04:00
Jennifer Wei	f7dba95f0b	Merge pull request #360 from aqlaboratory/installation-updates ... Merging installation updates and updates	2023-10-27 15:13:12 -04:00
Sachin Kadyan	9e32781fd6	README: Small improvements, info regarding templates	2023-10-25 13:42:59 -05:00
jnwei	f68a6c694b	Update readme, also reset flash attention version to 0.2.1 in environment.yml	2023-10-25 08:51:58 -04:00
Sachin Kadyan	2d4fe4f414	README: Update details about SoloSeq and inference-time embedding generation.	2023-10-24 13:07:14 -05:00
Sachin Kadyan	4c8e37644e	README: Add details about using the bulk embedding generation script	2023-10-23 20:45:56 -05:00
Gustaf Ahdritz	0c20e3c989	Update BibTex	2023-10-20 15:56:10 -04:00
jnwei	d6ae9f5894	Remove conda env config setting and update to README	2023-10-20 15:44:34 -04:00
Jennifer Wei	3e3f07c7f2	Updates installation instructions in the README.	2023-10-20 07:02:11 -07:00
Gustaf Ahdritz	2300f6720d	Update BibTex	2023-10-19 18:44:01 -04:00
Sachin Kadyan	6381ddd6e9	README fixes for single sequence model	2023-10-11 15:41:15 -05:00
Gustaf Ahdritz	6aefa986a8	Fix typos	2023-10-10 16:33:07 -04:00
Sachin Kadyan	3c240cb3f2	Updated README: Running seqemb model inference	2023-10-10 16:33:07 -04:00
Christina Floristean	a4fbd978c9	Update kernel description in README	2023-09-14 14:58:05 -04:00
Christina Floristean	0a6230a387	Add kernel as new feature in README	2023-09-13 18:28:22 -04:00
Gustaf Ahdritz	2134cc09b3	Update BibTeX	2023-08-14 16:30:47 -04:00
Gustaf Ahdritz	c8b98f54a3	Remove misleading link	2023-04-15 19:57:36 -04:00
awaelchli	12f2cd4e4a	cpus_per_task	2023-02-26 13:21:01 +01:00
Sam DeLuca	ef222a31cb	add long_sequence_inference option to command line	2022-12-13 19:46:07 +00:00
Gustaf Ahdritz	59277de168	Update link	2022-12-05 23:09:30 -05:00
Gustaf Ahdritz	109442b14e	Shorten bibTeX	2022-11-23 20:30:25 -05:00
Gustaf Ahdritz	962ab7a47b	Update BibTex	2022-11-22 17:56:28 -05:00
Gustaf Ahdritz	a1f77ad018	Add half-precision training to README	2022-09-27 23:01:20 -04:00
Gustaf Ahdritz	d54b4afaf0	Reformat README a little	2022-08-28 17:42:04 -04:00
Gustaf Ahdritz	2c7627f390	Improve RODA download process	2022-08-28 17:29:13 -04:00
Tim O'Donnell	19bce219ca	Unzip uniref30_2103.tar.gz after download ... Also fix a typo in the README	2022-08-12 14:51:31 -04:00
Gustaf Ahdritz	8881b210f6	Add RODA flattening script	2022-08-09 23:41:38 -04:00
Gustaf Ahdritz	e8b3789f33	Replace cursed seed	2022-08-08 17:15:48 -04:00
Gustaf Ahdritz	e49c6dc7ca	Add long sequence inference preset	2022-08-05 00:15:36 -04:00
Gustaf Ahdritz	b18026fd66	Add CAMEO link	2022-08-01 20:52:35 -04:00
Gustaf Ahdritz	5fecb9216d	Improve validation set instructions	2022-08-01 20:35:29 -04:00
Gustaf Ahdritz	3ced7cf2af	Improve validation download script	2022-08-01 20:22:36 -04:00
Gustaf Ahdritz	d96f27b1c5	Fix sample training command	2022-07-29 23:32:27 -04:00
Gustaf Ahdritz	ce2e1f2916	Fix sample training command	2022-07-29 17:32:40 -04:00
Gustaf Ahdritz	b803413816	Add note about parameter/preset compatibility	2022-07-21 15:05:34 -04:00