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2025-08-07 20:22:43 +02:00
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@@ -171,7 +171,7 @@ prank rescore fpocket.ds -c rescore_2024 # use new experimental rescoring model
For rescoring, the dataset file needs to have a specific 2-column format. See examples in `test_data/`: `fpocket.ds`, `concavity.ds`, `puresnet.ds`.
New experimental rescoring model `-c rescore_2024` shows promising result but hasn't been fully evaluated yet. It is recommended for AlphaFold models, NMR and cryo-EM structures since it doesn't depend on b-factor as a feature.
New experimental rescoring model `-c rescore_2024` shows promising results but hasn't been fully evaluated yet. It is recommended for AlphaFold models, NMR and cryo-EM structures since it doesn't depend on b-factor as a feature.
#### Run fpocket and rescore in one command
@@ -214,7 +214,7 @@ git clone https://github.com/rdk/p2rank.git && cd p2rank
./unit-tests.sh # optionally you can run tests to check everything works fine on your machine
./tests.sh quick # runs further tests
```
Now you can run the program via:
You can now run the program using:
```ruby
distro/prank # standard mode that is run in production
./prank.sh # development/training mode