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Move misc/tutorials/ to documentation/ and add index readme. Update rescoring.md: add quick-start examples, paper links for all methods, add Pocketeer to supported methods list. Fix stale links in README.md (tutorials path, local-env.sh typo).
42 lines
1.5 KiB
Markdown
42 lines
1.5 KiB
Markdown
## More prediction examples
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### predict using the model trained with conservation
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~~~
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./prank.sh eval-predict ../p2rank-datasets/coach420.ds -l conserv -out_subdir CONS \
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-c distro/config/conservation_hmm \
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-conservation_dir 'coach420/conservation/e5i1/scores' \
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-fail_fast 1 \
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-visualizations 0 | ./logc.sh
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./prank.sh eval-predict ../p2rank-datasets/holo4k.ds -l conserv -out_subdir CONS \
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-c distro/config/conservation_hmm \
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-conservation_dir 'holo4k/conservation/e5i1/scores' \
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-fail_fast 1 \
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-visualizations 0 | ./logc.sh
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./prank.sh eval-predict ../p2rank-datasets/joined.ds -l conserv -out_subdir CONS \
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-c distro/config/conservation_hmm \
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-conservation_dir 'joined/conservation/e5i1/scores' \
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-fail_fast 1 \
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-visualizations 0 | ./logc.sh
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./prank.sh eval-predict ../p2rank-datasets/fptrain.ds -l conserv -out_subdir CONS \
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-c distro/config/conservation_hmm \
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-conservation_dir 'fptrain/conservation/e5i1/scores' \
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-fail_fast 1 \
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-visualizations 0 | ./logc.sh
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# same but with default model
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./prank.sh eval-predict ../p2rank-datasets/coach420.ds -l default \
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-fail_fast 1 \
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-visualizations 0
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./prank.sh eval-predict ../p2rank-datasets/holo4k.ds -l default \
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-fail_fast 1 \
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-visualizations 0
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./prank.sh eval-predict ../p2rank-datasets/joined.ds -l default \
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-fail_fast 1 \
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-visualizations 0
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./prank.sh eval-predict ../p2rank-datasets/fptrain.ds -l default \
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-fail_fast 1 \
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-visualizations 0
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~~~
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