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af1d6eeb18
PLAN.md and SPEC.md were pre-implementation design docs for the pocket-grid feature. The feature has shipped, so they're frozen artifacts in the active todo/ namespace. Delete them and strip the three "see SPEC.md" comments that pointed at SPEC.md from Main.groovy and the predict/rescore routines. Also reassess the PyMOL rank-gap entry in the audit: P2Rank ranks pockets contiguously throughout the predict path and all in-tree loaders (except SiteHoundLoader), so the previously-listed "renderer ignores rank gaps" is cosmetic-only (empty objects in the Models panel for small pockets whose filled BitSet ended up empty). Downgrade to a parity nit under Inconsistencies; promote the PUResNet surfaceAtoms re-linking to the Top-5.