rdk af1d6eeb18 Drop frozen pocket-grid PLAN/SPEC; refine audit punch-list ...

PLAN.md and SPEC.md were pre-implementation design docs for the pocket-grid
feature. The feature has shipped, so they're frozen artifacts in the active
todo/ namespace. Delete them and strip the three "see SPEC.md" comments that
pointed at SPEC.md from Main.groovy and the predict/rescore routines.

Also reassess the PyMOL rank-gap entry in the audit: P2Rank ranks pockets
contiguously throughout the predict path and all in-tree loaders (except
SiteHoundLoader), so the previously-listed "renderer ignores rank gaps" is
cosmetic-only (empty objects in the Models panel for small pockets whose
filled BitSet ended up empty). Downgrade to a parity nit under
Inconsistencies; promote the PUResNet surfaceAtoms re-linking to the Top-5.

2026-05-20 19:42:47 +02:00

..

audit-post-2.5.1.md

Drop frozen pocket-grid PLAN/SPEC; refine audit punch-list

2026-05-20 19:42:47 +02:00

technical-debt.md

Add cofactor-as-protein-surface feature (Issue #79 part 2)

2026-05-14 07:58:14 +02:00