Jarrett Johnson
46530027e6
Fix cell color for ray/png
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Fixes #505
2026-05-04 10:58:05 -04:00
Jarrett Johnson
f1fa2ed417
Empty chain selections should be quoted
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Fixes #502
2026-03-25 03:13:49 -04:00
Jarrett Johnson
f6d82762c7
Bump actions/checkout and actions/setup-python to v6
2026-03-25 01:38:08 -04:00
Jarrett Johnson
a7dfd4df79
Remove monkeypatch distutils
2026-03-25 01:19:28 -04:00
Jarrett Johnson
fafebb56d3
Improve peptide nucleic acid visualization
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Fixes #187
2026-03-10 22:28:14 -04:00
Jarrett Johnson
5456a6768b
PYMOL-5436: Add new command 'protonate' for chemically-aware protonation
2026-03-10 22:27:49 -04:00
Jarrett Johnson
173f174c04
PYMOL-5439: Support cyclic peptide visualization in cartoons
2026-03-10 22:02:47 -04:00
jrom99
3a56aaebe5
Refactor list_scan to handle new pymol-scripts-repo layout ( #499 )
2026-03-01 10:05:07 -05:00
Jarrett Johnson
4769e62c02
PYMOL-5418: Add USAlign implementation for structural alignment
2026-03-01 00:10:16 -05:00
Jarrett Johnson
841c094393
Adjust test for autoerr missing key
2026-02-24 01:55:05 -05:00
Jarrett Johnson
777e1d2ba3
Dedent exception in autoerr
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Fixes #498
Regression introduced in fef4a02642
2026-02-24 01:52:17 -05:00
Jarrett Johnson
87d27daafb
port over qt6 migrations
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Fixes #498
2026-02-24 01:35:00 -05:00
Jarrett Johnson
d30a289129
Fix dropped residues with cif_use_auth and inscodes
2026-02-21 01:16:36 -05:00
Jarrett Johnson
ede1553a9c
PYMOL-5422: Fix matrix_copy pointer alias
2026-02-20 18:06:28 -05:00
Jarrett Johnson
bc0943cb7d
Improve validation coefficient import
2026-02-20 17:04:57 -05:00
Jarrett Johnson
e0378ecd6d
Remove properties #ifdefs
2026-02-20 16:46:25 -05:00
Jarrett Johnson
92eeb4867f
Port properties feature from incentive
2026-02-20 16:46:25 -05:00
Jarrett Johnson
227031aa95
Export BCIF data column with consistent case
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Though the columns should be case insensitive?
2026-02-19 14:29:17 -05:00
Jarrett Johnson
4a2da35286
Support multiobject bcif exporting
2026-02-19 14:17:59 -05:00
wszqkzqk
8947d3bc06
fix: update launch script handling for mingw-w64/msys2 on Windows ( #487 )
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Signed-off-by: Zhou Qiankang <wszqkzqk@qq.com >
2026-02-12 21:12:49 -05:00
Jarrett Johnson
9eb37e002c
PYMOL-5409: Fix partial esp maps covering entire surface ( #373 )
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Fixes #445
2026-02-10 15:18:00 -05:00
Jarrett Johnson
7d7eed2b73
clang-format gadget module
2026-02-10 15:17:23 -05:00
Jarrett Johnson
4edf9aab84
PYMOL-4915 PYMOL-4964 PYMOL-4752: Fix Gizmo rendering with TMode3
2026-02-06 16:08:24 -05:00
Jarrett Johnson
462dd320b8
Use exec over exec_ for font context menu
2026-02-02 10:03:50 -05:00
Jarrett Johnson
bc2ea7ca0c
Copy attributes for QFrame.Sunken/Panel
2026-02-02 10:02:33 -05:00
Thomas Holder
9c48a9917d
Fix compiling with use-msgpackc=no ( #488 )
2025-12-24 11:22:50 -05:00
wszqkzqk
58cfe7b422
build: support to build pymol with mingw-w64 on Windows ( #486 )
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Signed-off-by: Zhou Qiankang <wszqkzqk@qq.com >
2025-12-08 09:35:24 -05:00
Pedro Sousa Lacerda
0a53de09b0
Add support for >=, <=, == operators in selections
2025-12-08 09:32:07 -05:00
Pedro Sousa Lacerda
796d84edec
Small refactor to accommodate support for >=, <= and == operators in selections
2025-12-08 09:32:07 -05:00
pslacerda1
9c92399973
Add new_command and improved type inference ( #470 )
2025-11-28 12:42:41 -05:00
Jarrett Johnson
7b40e3e5fe
PYMOL-5361: export BCIF implementation
2025-11-25 14:56:27 -05:00
Thomas Holder
63e312ae08
Fix PytestUnraisableExceptionWarning
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pytest reports a warning in tests/api/build.py::TestNucBuilder
AttributeError: 'Indexed' object has no attribute 'molecule'
Since 'molecule' seems to be an optional member of the chempy Indexed
object, the AttributeError can be deliberately ignored.
2025-11-24 12:35:59 -05:00
Thomas Holder
9375fd24c0
get_object_list('') -> []
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Closes https://github.com/schrodinger/pymol-open-source/issues/478
2025-11-11 13:29:33 -05:00
Thomas Holder
c8e2a1b724
Error propagation for cmd.get_object_list()
2025-11-11 13:29:33 -05:00
Jarrett Johnson
a71b21233e
Port fix: selection regression on macOS
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Fixes #476
2025-10-29 14:47:01 -04:00
galeo
5b3317e3d0
Fix undeclared identifier 'float_text' error in RepLabel.cpp ( #475 )
2025-10-24 11:36:02 -04:00
Jarrett Johnson
58484245b6
add <cstdint> header to GPUVertDesc
2025-10-10 11:42:17 -04:00
Jarrett Johnson
984bc6ba4d
fix compilation errors
2025-09-26 14:41:59 -04:00
Jarrett Johnson
6977216eb1
PYMOL-5169: Move VertexBufferGL to generalized VertexBuffer (etc)
2025-09-26 12:07:31 -04:00
Jarrett Johnson
57daee0b7e
Refactor Result to include less across source files
2025-09-26 12:07:31 -04:00
Jarrett Johnson
dc70a2f303
PYMOL-5234: Fix draw while using antialiasing_shader
2025-09-26 12:07:31 -04:00
Jarrett Johnson
4e2fcbc8fc
PYMOL-5216: grid_slot setting should immediately reassign
2025-09-26 12:07:31 -04:00
Jarrett Johnson
c579637687
PYMOL-5211: Fix carve texture unpack alignments
2025-09-26 12:07:30 -04:00
Jarrett Johnson
ec17f65a7f
PYMOL-5161: Update screen after bg color change
2025-09-26 12:07:30 -04:00
Jarrett Johnson
ffa26aab3e
PYMOL-5122: Don't render null mesh cgo
2025-09-26 12:07:30 -04:00
Jarrett Johnson
cc6ae216ec
clang-format Executive module
2025-09-26 12:07:30 -04:00
Jarrett Johnson
567357fb19
PYMOL-5102: Refactor Object Slice rendering logic
2025-09-26 12:07:30 -04:00
Jarrett Johnson
1df96fb364
clang-format ObjectSlice module
2025-09-26 12:07:30 -04:00
Jarrett Johnson
d5a62ca45f
clang-format Editor module
2025-09-26 12:07:30 -04:00
Jarrett Johnson
5a67f3816d
clang-format ObjectVolume module
2025-09-26 12:07:30 -04:00
