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10 Commits

Author SHA1 Message Date
Jarrett Johnson
8efe994820 Dont crash on GL error 2025-04-04 11:27:40 -04:00
Jarrett Johnson
15cb785d71 fix movie.produce 2025-01-10 17:04:02 -05:00
Jarrett Johnson
fbfda4a257 Replace NULL with nullptr 2024-05-20 09:07:33 -04:00
Thomas Holder
dc2aff4133 Refactor: Doxygen comments, ObjectMoleculeUpdateNeighbors 
- Use proper doxygen syntax for all function comments
- ObjectMoleculeUpdateNeighbors allow const argument
- Remove obsolete ObjectMolecule::BondCounter
 2021-01-14 15:23:06 +01:00
Thomas Holder
03aa2f3a9f Prevent print_trace() being stripped in release mode 2020-11-11 16:53:37 +01:00
Thomas Holder
8298707a6b Remove libexecinfo dependency 
Remove the unix-only `backtrace` code from `print_trace()`. Kept the
function so that it can be used to set a breakpoint with a debugger.

Closes https://github.com/schrodinger/pymol-open-source/issues/135
 2020-10-05 14:06:38 +02:00
Jarrett Johnson
faf21cf2e6 PYMOL-3089 Added support for non-const userParam parameter in glDebugMessageCallback 2018-08-16 19:17:16 +02:00
Thomas Holder
665aa6884a fix wildcard, fix PDB 99999 crash, PQR parsing... 
* fix selection wildcard (sf.net/p/pymol/bugs/209)
* fix PDB atom id > 99999 crash
* more robust PQR parsing
* pymol2.PyMOL() context manager
* new setting: cif_metalc_as_zero_order_bonds
* new setting sdf_write_zero_order_bonds
* cif: accept _chem_comp_bond.type alias for _chem_comp_bond.value_order
* better support for mingwpy compiler (Christoph Gohlke)
 2018-06-08 10:52:36 +00:00
Thomas Holder
1742d75d13 anaglyph batch mode, all_states measurements, ... 
* fix anaglyph stereo in batch (headless) mode
* fix possible memory corruption with boolean settings
* measurement wizard: distances between states (all_states=on)
* get_fastastr: nucleic acid, by chain
* menu: A (Action) > group
* sequence viewer menu: ss (Secondary Structure)
* MAE export of groups (s_m_subgroupid)
* macOS: -O3 -fno-strict-aliasing (bugs/205)
 2018-05-03 14:46:44 +00:00
Thomas Holder
7d2bb243e6 restore r4188 
r4188 was published on 2018-04-10 but lost after a sourceforge storage problem.
See for example https://sourceforge.net/p/forge/site-support/17420/

2.2.0a0 (unstable/experimental)

* sf.net/p/pymol/bugs/199 bash -> sh
* ignore zero-order bonds in neighbor lookup
* fix crash loading reduced 5ijo.mmtf
* volume panel: fix zoom (CTRL+R-Drag) and value input (R-Click)
* QOpenGLWidget support (not active by default)
* --gldebug -> backtrace on GL error
 2018-05-02 06:32:39 +00:00