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pymol-open-source/layer2
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Jarrett Johnson 46530027e6 Fix cell color for ray/png 
Fixes #505
2026-05-04 10:58:05 -04:00
..
AssemblyHelpers.cpp
Refactor: Doxygen comments, ObjectMoleculeUpdateNeighbors
2021-01-14 15:23:06 +01:00
AssemblyHelpers.h
refactor: lexborrow_t
2018-11-15 16:27:43 +01:00
AtomInfo.cpp
Improve peptide nucleic acid visualization
2026-03-10 22:28:14 -04:00
AtomInfo.h
Improve peptide nucleic acid visualization
2026-03-10 22:28:14 -04:00
AtomInfoHistory.cpp
clang-tidy modernize-use-nullptr
2019-01-18 10:04:10 +01:00
AtomInfoHistory.h
Replace NULL with nullptr
2024-05-20 09:07:33 -04:00
AtomNeighbors.h
Refactor ObjectMolecule::Neighbor access
2021-04-28 04:34:33 -04:00
BondTypeHistory.cpp
PYMOL-3570 Bonds to crystal symmetry mates
2021-02-11 18:58:26 +01:00
BondTypeHistory.h
PYMOL-3570 Bonds to crystal symmetry mates
2021-02-11 18:58:26 +01:00
CifBondDict.h
Replace NULL with nullptr
2024-05-20 09:07:33 -04:00
CifFile.cpp
Support multiobject bcif exporting
2026-02-19 14:17:59 -05:00
CifFile.h
PYMOL-5361: export BCIF implementation
2025-11-25 14:56:27 -05:00
CifMoleculeReader.cpp
Fix dropped residues with cif_use_auth and inscodes
2026-02-21 01:16:36 -05:00
CoordSet.cpp
Fix cell color for ray/png
2026-05-04 10:58:05 -04:00
CoordSet.h
Remove properties #ifdefs
2026-02-20 16:46:25 -05:00
DistSet.cpp
Port code changes from incentive (06/2023)
2025-01-04 12:09:32 -05:00
DistSet.h
Port code changes from incentive (06/2023)
2025-01-04 12:09:32 -05:00
GadgetSet.cpp
clang-format gadget module
2026-02-10 15:17:23 -05:00
GadgetSet.h
clang-format gadget module
2026-02-10 15:17:23 -05:00
HydrogenAdder.cpp
PYMOL-4737: Fix array overrun HydroAdder
2024-01-30 18:37:13 -05:00
HydrogenAdder.h
Forward decls/Move headers to source
2021-08-20 11:24:10 -04:00
MmodTyping.cpp
Refactor: Doxygen comments, ObjectMoleculeUpdateNeighbors
2021-01-14 15:23:06 +01:00
MmodTyping.h
Forward decls/Move headers to source
2021-08-20 11:24:10 -04:00
MmtfMoleculeReader.cpp
Replace NULL with nullptr
2024-05-20 09:07:33 -04:00
Mol2Typing.cpp
Forward decls/Move headers to source
2021-08-20 11:24:10 -04:00
Mol2Typing.h
Forward decls/Move headers to source
2021-08-20 11:24:10 -04:00
MolV3000.cpp
Replace NULL with nullptr
2024-05-20 09:07:33 -04:00
MolV3000.h
Forward decls/Move headers to source
2021-08-20 11:24:10 -04:00
ObjectAlignment.cpp
More Replace NULL with nullptr
2024-06-02 20:44:43 -04:00
ObjectAlignment.h
Place CObject in pymol namespace
2021-02-11 19:14:06 +01:00
ObjectCallback.cpp
Replace NULL with nullptr
2024-05-20 09:07:33 -04:00
ObjectCallback.h
Place CObject in pymol namespace
2021-02-11 19:14:06 +01:00
ObjectCGO.cpp
clang-format ObjectCGO module
2025-09-26 12:07:30 -04:00
ObjectCGO.h
clang-format ObjectCGO module
2025-09-26 12:07:30 -04:00
ObjectCurve.cpp
Replace makeshift C++17 with standard
2024-04-10 12:31:16 -04:00
ObjectCurve.h
Include minimal glm headers instead of glm.hpp
2024-08-13 14:55:36 -04:00
ObjectDist.cpp
More Replace NULL with nullptr
2024-06-02 20:44:43 -04:00
ObjectDist.h
Place CObject in pymol namespace
2021-02-11 19:14:06 +01:00
ObjectGadget.cpp
clang-format gadget module
2026-02-10 15:17:23 -05:00
ObjectGadget.h
clang-format gadget module
2026-02-10 15:17:23 -05:00
ObjectGadgetRamp.cpp
PYMOL-5409: Fix partial esp maps covering entire surface (#373)
2026-02-10 15:18:00 -05:00
ObjectGadgetRamp.h
clang-format gadget module
2026-02-10 15:17:23 -05:00
ObjectGroup.cpp
Replace NULL with nullptr
2024-05-20 09:07:33 -04:00
ObjectGroup.h
Place CObject in pymol namespace
2021-02-11 19:14:06 +01:00
ObjectMap.cpp
Refactor Result to include less across source files
2025-09-26 12:07:31 -04:00
ObjectMap.h
PYMOL-5102: Refactor Object Slice rendering logic
2025-09-26 12:07:30 -04:00
ObjectMesh.cpp
PYMOL-5122: Don't render null mesh cgo
2025-09-26 12:07:30 -04:00
ObjectMesh.h
Place CObject in pymol namespace
2021-02-11 19:14:06 +01:00
ObjectMolecule2.cpp
Remove properties #ifdefs
2026-02-20 16:46:25 -05:00
ObjectMolecule3.cpp
pbc_wrap/pbc_unwrap, smooth+intra_fit pbc support
2021-03-26 14:04:35 +01:00
ObjectMolecule3.h
pbc_wrap/pbc_unwrap, smooth+intra_fit pbc support
2021-03-26 14:04:35 +01:00
ObjectMolecule.cpp
Remove properties #ifdefs
2026-02-20 16:46:25 -05:00
ObjectMolecule.h
Remove properties #ifdefs
2026-02-20 16:46:25 -05:00
ObjectSlice.cpp
PYMOL-5102: Refactor Object Slice rendering logic
2025-09-26 12:07:30 -04:00
ObjectSlice.h
PYMOL-5102: Refactor Object Slice rendering logic
2025-09-26 12:07:30 -04:00
ObjectSurface.cpp
More Replace NULL with nullptr
2024-06-02 20:44:43 -04:00
ObjectSurface.h
PYMOL-3013: Fix unit cell rendering
2024-01-30 16:58:49 -05:00
ObjectVolume.cpp
PYMOL-5211: Fix carve texture unpack alignments
2025-09-26 12:07:30 -04:00
ObjectVolume.h
clang-format ObjectVolume module
2025-09-26 12:07:30 -04:00
RepAngle.cpp
More Replace NULL with nullptr
2024-06-02 20:44:43 -04:00
RepAngle.h
Forward decls/Move headers to source
2021-08-20 11:24:10 -04:00
RepCartoon.cpp
Improve peptide nucleic acid visualization
2026-03-10 22:28:14 -04:00
RepCartoon.h
Forward decls/Move headers to source
2021-08-20 11:24:10 -04:00
RepCylBond.cpp
Remove _PYMOL_IOS (Discontinued; prep for MVK)
2024-08-30 10:05:58 -04:00
RepCylBond.h
Forward decls/Move headers to source
2021-08-20 11:24:10 -04:00
RepDihedral.cpp
More Replace NULL with nullptr
2024-06-02 20:44:43 -04:00
RepDihedral.h
Forward decls/Move headers to source
2021-08-20 11:24:10 -04:00
RepDistDash.cpp
optional as bool
2025-01-04 21:24:34 -05:00
RepDistDash.h
Forward decls/Move headers to source
2021-08-20 11:24:10 -04:00
RepDistLabel.cpp
clang-format RepDistLabel.cpp
2024-08-13 16:10:21 -04:00
RepDistLabel.h
Forward decls/Move headers to source
2021-08-20 11:24:10 -04:00
RepDot.cpp
PYMOL-5089: MapType refactor
2025-09-26 12:07:26 -04:00
RepDot.h
PYMOL-3533 Refactor Rep as polymorphic type (2)
2020-09-30 09:46:26 +02:00
RepEllipsoid.cpp
Replace NULL with nullptr
2024-05-20 09:07:33 -04:00
RepEllipsoid.h
Forward decls/Move headers to source
2021-08-20 11:24:10 -04:00
RepLabel.cpp
Fix undeclared identifier 'float_text' error in RepLabel.cpp (#475)
2025-10-24 11:36:02 -04:00
RepLabel.h
Forward decls/Move headers to source
2021-08-20 11:24:10 -04:00
RepMesh.cpp
PYMOL-5089: MapType refactor
2025-09-26 12:07:26 -04:00
RepMesh.h
Forward decls/Move headers to source
2021-08-20 11:24:10 -04:00
RepNonbonded.cpp
More Replace NULL with nullptr
2024-06-02 20:44:43 -04:00
RepNonbonded.h
Forward decls/Move headers to source
2021-08-20 11:24:10 -04:00
RepNonbondedSphere.cpp
More Replace NULL with nullptr
2024-06-02 20:44:43 -04:00
RepNonbondedSphere.h
Forward decls/Move headers to source
2021-08-20 11:24:10 -04:00
RepRibbon.cpp
Improve peptide nucleic acid visualization
2026-03-10 22:28:14 -04:00
RepRibbon.h
Forward decls/Move headers to source
2021-08-20 11:24:10 -04:00
RepSphere.cpp
PYMOL-5089: MapType refactor
2025-09-26 12:07:26 -04:00
RepSphere.h
Forward decls/Move headers to source
2021-08-20 11:24:10 -04:00
RepSphereGenerate.cpp
Replace NULL with nullptr
2024-05-20 09:07:33 -04:00
RepSphereGenerate.h
Forward decls/Move headers to source
2021-08-20 11:24:10 -04:00
RepSphereImmediate.cpp
Forward decls/Move headers to source
2021-08-20 11:24:10 -04:00
RepSphereImmediate.h
Forward decls/Move headers to source
2021-08-20 11:24:10 -04:00
RepSurface.cpp
RepSurface refactor (VLA2Vec and SurfaceType)
2025-09-26 12:07:26 -04:00
RepSurface.h
Forward decls/Move headers to source
2021-08-20 11:24:10 -04:00
RepWireBond.cpp
More Replace NULL with nullptr
2024-06-02 20:44:43 -04:00
RepWireBond.h
Forward decls/Move headers to source
2021-08-20 11:24:10 -04:00
Sculpt.cpp
Replace NULL with nullptr
2024-05-20 09:07:33 -04:00
Sculpt.h
Updated CShaker class
2019-08-30 11:55:32 +02:00
SculptCache.cpp
refactor SculptCache
2019-12-09 17:34:45 +01:00
SculptCache.h
refactor SculptCache
2019-12-09 17:34:45 +01:00
SideChainHelper.cpp
Refactor: Doxygen comments, ObjectMoleculeUpdateNeighbors
2021-01-14 15:23:06 +01:00
SideChainHelper.h
segi, resn, name of arbitrary length; settings in iterate/alter
2015-12-14 19:11:12 +00:00
USalign.cpp
PYMOL-5418: Add USAlign implementation for structural alignment
2026-03-01 00:10:16 -05:00
USalign.h
PYMOL-5418: Add USAlign implementation for structural alignment
2026-03-01 00:10:16 -05:00
VFont.cpp
Replace NULL with nullptr
2024-05-20 09:07:33 -04:00
VFont.h
More Replace NULL with nullptr
2024-06-02 20:44:43 -04:00