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Jun Liu
2025-12-05 15:49:25 +08:00
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@@ -114,6 +114,14 @@ python run_pplm.py example/seq1.fasta example/seq2.fasta example/seq1-seq2.pplm.
### PPLM-PPI
- Command:
```bash
python python run_pplm-ppi.py example/seq1.fasta example/seq2.fasta
```
- Output: Predicted interaction probability printed to the command line：
```
Predicted interaction score: 0.9431089
```
<---
```bash
python run_pplm-ppi.py example/seq_pairs.fasta example/seq_pairs.results
```
- Output: The predicted interaction probabilities are saved in example/seq_pairs.results:
@@ -136,6 +144,7 @@ Each entry consists of:
• Protein Pair: Represented in the format >Protein1:Protein2.
• Interaction Probability: The likelihood of interaction between the given protein pair.
```
-->
### PPLM-Affinity
- Command: