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bug fix

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Jérôme Tubiana
2021-10-31 16:01:15 +02:00
parent 162d696777
commit 9364b8fc38
1 changed files with 2 additions and 2 deletions
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utilities/paths.py
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@@ -48,7 +48,7 @@ elif mode == 'tau':
homology_folder = library_folder + 'baselines/homology/' # Where files are stored for homology baseline.
path2hhblits = '/specific/netapp5_2/iscb/wolfson/sequence_database/hh-suite/build/bin/hhblits' # Path to hhblits binary. Not required if using ScanNet_noMSA networks.
# path2sequence_database = '/specific/netapp5_2/iscb/wolfson/sequence_database/uniclust30_2018_08/uniclust30_2018_08' # Path to sequence database Not required if using ScanNet_noMSA networks.
path2sequence_database = '/specific/netapp5_2/iscb/wolfson/sequence_database/uniclust30_2020_06/uniclust30_2020_06' # Path to sequence database Not required if using ScanNet_noMSA networks.
path2sequence_database = '/specific/netapp5_2/iscb/wolfson/sequence_database/uniclust30_2020_06/UniRef30_2020_06' # Path to sequence database Not required if using ScanNet_noMSA networks.
path_to_dssp = '/specific/a/home/cc/students/cs/jeromet/Drive/Scripts/3D_Proteins/xssp-3.0.9/mkdssp' # Path to dssp binary. Only for reproducing baseline performance.
path_to_msms = '/specific/a/home/cc/students/cs/jeromet/Drive/Scripts/3D_Proteins/msms/msms.x86_64Linux2.2.6.1' # Path to msms binary. Only for reproducing baseline performance.
path_to_multiprot = '/home/iscb/wolfson/jeromet/MultiProt/multiprot.Linux' # Path to multiprot executable. Only relevant for homology baseline
@@ -65,7 +65,7 @@ elif mode == 'tau_webserver':
homology_folder = library_folder + 'baselines/homology/' # Where files are stored for homology baseline.
path2hhblits = '/specific/netapp5_2/iscb/wolfson/sequence_database/hh-suite/build/bin/hhblits' # Path to hhblits binary. Not required if using ScanNet_noMSA networks.
# path2sequence_database = '/specific/netapp5_2/iscb/wolfson/sequence_database/uniclust30_2018_08/uniclust30_2018_08' # Path to sequence database Not required if using ScanNet_noMSA networks.
path2sequence_database = '/specific/netapp5_2/iscb/wolfson/sequence_database/uniclust30_2020_06/uniclust30_2020_06' # Path to sequence database Not required if using ScanNet_noMSA networks.
path2sequence_database = '/specific/netapp5_2/iscb/wolfson/sequence_database/uniclust30_2020_06/UniRef30_2020_06' # Path to sequence database Not required if using ScanNet_noMSA networks.
path_to_dssp = '/specific/a/home/cc/students/cs/jeromet/Drive/Scripts/3D_Proteins/xssp-3.0.9/mkdssp' # Path to dssp binary. Only for reproducing baseline performance.
path_to_msms = '/specific/a/home/cc/students/cs/jeromet/Drive/Scripts/3D_Proteins/msms/msms.x86_64Linux2.2.6.1' # Path to msms binary. Only for reproducing baseline performance.
path_to_multiprot = None # Path to multiprot executable. Only relevant for homology baseline