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Author SHA1 Message Date
Jérôme Tubiana
a61623cd98 Fix download bug 2025-06-18 16:32:33 +03:00
Jérôme Tubiana
7685549c8e Small bug fixes 2023-06-13 13:36:49 +03:00
Jérôme Tubiana
7407c1ae8c Updated installation instruction following feedback by Kliment Olechnovic 2023-06-08 12:30:25 +03:00
Jérôme Tubiana
77d851037e Specified tensorflow-gpu version 2022-08-30 09:39:16 +02:00
Jérôme Tubiana
51bf39f9c0 Clean repo for publication #7 2022-05-25 18:55:26 +03:00
Jérôme Tubiana
63b186cb8d Clean repo for publication #6 2022-05-25 16:35:39 +03:00
Jérôme Tubiana
839f54b099 Clean repo for publication #5 2022-05-25 16:17:10 +03:00
Jérôme Tubiana
70c52a3c14 Clean repo for publication #4 2022-05-25 15:53:31 +03:00
Jérôme Tubiana
c5260a2e3f Clean repo for publication #3 2022-05-25 15:41:54 +03:00
Jérôme Tubiana
4557849375 Clean repo for publication #2 2022-05-25 15:27:58 +03:00
Jérôme Tubiana
7c13a16680 Clean repo for publication 2022-05-25 11:30:35 +03:00
Jérôme Tubiana
24d41192aa Major update 
Added support for regression
 2022-01-13 18:37:42 +02:00
Jérôme Tubiana
e22d02ff54 Bug fix 2022-01-04 17:38:48 +02:00
Jérôme Tubiana
57414fb986 Large code update 
- Added support for multi-output networks including atomic filter, simplified feature extraction.
- Multiple retrainings for the review.
- Improvements on saliency analysis.
- Added pluggin for nglview
 2022-01-03 12:50:00 +02:00
Jérôme Tubiana
8ba8dd2b39 Fixed (?) numba bug 2021-12-28 11:15:35 +02:00
Jérôme Tubiana
fe5a172f52 Fixed (?) bug with nan due to numba x multiprocessing instability 2021-12-26 12:21:34 +02:00
Jérôme Tubiana
cacd6b8320 Improved script for visualization of spatio-chemical filters 2021-12-25 19:24:49 +02:00
Jérôme Tubiana
7e4093a293 3D filters 
- Added scripts for visualizing 3D filters.
- Added scripts for visualizing 3D neighborhoods.
- Change predict_feature.py API (added single input support).
 2021-11-22 18:26:59 +02:00
Jérôme Tubiana
2e5e8d0695 Bug fix 2021-11-14 10:15:06 +02:00
Jérôme Tubiana
2fc241af6d Support for attention coefficient extraction 2021-11-10 18:00:29 +02:00
Jérôme Tubiana
1bd735a0fb Added support for attention coefficients output 
- Attention
- Fix learning rate for transfer learning
 2021-11-07 16:30:14 +02:00
Jérôme Tubiana
d0c67c1a0b sequence_utils.py bug fix 2021-11-03 13:09:21 +02:00
Jérôme Tubiana
541fcae867 Update sequence_utils.py 2021-11-02 09:46:41 +02:00
Jérôme Tubiana
3efc04f621 Added support for parallel pipeline processing 2021-11-01 12:57:56 +02:00
Jérôme Tubiana
9364b8fc38 bug fix 2021-10-31 16:01:15 +02:00
Jérôme Tubiana
162d696777 Various fixes 
- Fixed paths
- Uniclust 2020 is the default sequence database
- Few fixes to allow parallel processing of DSSP/MSAs.
 2021-10-31 10:37:01 +02:00
Jérôme Tubiana
8cb616a6ee Basic support for phosphorylated residues 2021-10-25 12:32:14 +03:00
Jérôme Tubiana
4b54b5de99 Added phosphorylated residues 2021-10-25 11:36:13 +03:00
Jérôme Tubiana
938279deaf Added PIDPBS dataset 2021-10-13 17:48:19 +03:00
Jérôme Tubiana
b19ca5fa4a Added homology baseline 2021-10-13 16:12:35 +03:00
Jérôme Tubiana
019be3494f Update dataset_utils.py 
Minor fix
 2021-10-12 14:30:19 +03:00
Jérôme Tubiana
5fdd84a260 First commit 2021-10-06 19:08:20 +03:00
Jérôme Tubiana
b717d77a0a Update .gitignore 2021-08-18 11:22:39 +02:00
Jérôme Tubiana
3e216d66f1 Initial commit 2021-08-18 11:18:29 +02:00