Alexander Rose
93a3eba66d
Merge pull request #1834 from molstar/fix-aromatic-ring-hybridization
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Fix aromatic ring detection not accounting for hybridization
2026-05-30 21:43:10 -07:00
Alexander Rose
41b8584fb7
Merge branch 'master' of https://github.com/molstar/molstar into fix-aromatic-ring-hybridization
2026-05-30 21:40:31 -07:00
Alexander Rose
523b17dfde
Merge pull request #1824 from sbittrich/master
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Non-covalent interactions: detect and visualize water bridges
2026-05-30 21:38:35 -07:00
Alexander Rose
c47b4d6078
Merge pull request #1833 from molstar/cam-anim-params
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Add axis param to camera spin/rock animation
2026-05-30 21:32:01 -07:00
Alexander Rose
b94073b96f
Merge branch 'master' of https://github.com/molstar/molstar into cam-anim-params
2026-05-30 21:27:45 -07:00
Alexander Rose
905eb3ec2f
add default for backwards compatibility
2026-05-30 21:26:28 -07:00
Sebastian
3ae72e5c60
generic bridge visuals
2026-05-29 10:55:48 +02:00
Alexander Rose
055dfd4946
Merge pull request #1840 from giagitom/fix-premul-rgb
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Fix exported image artifacts on transparent background
2026-05-26 21:58:08 -07:00
Sebastian
2601d2ba63
decouple water bridges from hbond detection
2026-05-26 16:35:38 +02:00
Sebastian
340806d774
generalized support of interaction bridges
2026-05-26 16:06:14 +02:00
Sebastian
18ad848de2
Merge remote-tracking branch 'upstream/master'
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# Conflicts:
# CHANGELOG.md
2026-05-26 13:57:53 +02:00
giagitom
9de8334af5
Fix exported image artifacts on transparent background
2026-05-26 13:05:24 +02:00
Alexander Rose
57580a5e6b
Merge pull request #1836 from giagitom/fix-cel-shading-ambient-color
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Fix cel-shaded ambient color being stripped to luminance
2026-05-23 21:50:07 -07:00
giagitom
7da4a85459
Fix cel-shaded ambient color being stripped to luminance
2026-05-19 16:43:00 +02:00
Alexander Rose
b7c380fd90
Merge branch 'master' of https://github.com/molstar/molstar into fix-aromatic-ring-hybridization
2026-05-17 22:21:57 -07:00
Alexander Rose
bcd304d058
header
2026-05-17 22:19:04 -07:00
Alexander Rose
fd50a8f8e0
Fix aromatic ring detection not accounting for hybridization
2026-05-17 22:17:55 -07:00
Alexander Rose
27f251e8e4
Merge pull request #1832 from molstar/ssao-multi-fix
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Fix SSAO half/quarter resolution textures for multi-scale
2026-05-17 20:15:09 -07:00
Alexander Rose
8d2a44983e
remove superfluous enableAnimation param
2026-05-16 22:29:55 -07:00
Alexander Rose
f806ac1444
Add axis param to camera spin/rock animation
2026-05-16 22:25:55 -07:00
Alexander Rose
63a585d88a
Merge pull request #1830 from josemduarte/ms-fix-omitwater
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Fix ModelServer bugs for omitWater param in surroundingLigands endpoint
2026-05-16 22:24:58 -07:00
Alexander Rose
a4b5a16fcd
Merge branch 'master' into ms-fix-omitwater
2026-05-16 22:22:42 -07:00
Alexander Rose
86bf859a63
Fix SSAO half/quarter resolution textures for multi-scale
2026-05-16 22:15:12 -07:00
Alexander Rose
1b8117d3f1
Fix Volume and Isosurface getBoundingSphere ignoring instances
2026-05-10 17:18:18 -07:00
Alexander Rose
400e2bbc45
Merge pull request #1822 from corredD/codex/dot-morton-spheres
2026-05-10 08:42:22 -07:00
Jose Duarte
e2e26c7e9c
Updating changelog
2026-05-09 22:28:38 -07:00
Jose Duarte
5ca9020cbf
mol-model: fix water leak in surroundingLigands query
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Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com >
2026-05-09 22:21:49 -07:00
Jose Duarte
ea4c411d5c
model-server: fix omit_water boolean parsing for REST GET requests
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Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com >
2026-05-09 22:21:49 -07:00
Alexander Rose
ba7e3fe827
Merge branch 'master' of https://github.com/molstar/molstar into pr/corredD/1822
2026-05-09 16:03:21 -07:00
Alexander Rose
8f20571a17
Merge pull request #1827 from molstar/camera-changed-event
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Camera helpers
2026-05-09 16:02:30 -07:00
Alexander Rose
c25a4247e6
Merge branch 'master' of https://github.com/molstar/molstar into camera-changed-event
2026-05-09 15:57:47 -07:00
Alexander Rose
1071d3d8ba
Merge pull request #1828 from molstar/instance-granularity-improvements
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Instance granularity improvements
2026-05-09 15:56:36 -07:00
Alexander Rose
e8dc046570
Merge branch 'master' of https://github.com/molstar/molstar into instance-granularity-improvements
2026-05-09 15:54:00 -07:00
Alexander Rose
27f9c2aa67
Merge pull request #1829 from molstar/mesoscale-preset
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Mesoscale preset
2026-05-09 15:53:29 -07:00
Alexander Rose
a4962231c8
revert
2026-05-09 15:51:05 -07:00
Alexander Rose
8833f29ce5
Merge branch 'master' of https://github.com/molstar/molstar into mesoscale-preset
2026-05-09 15:44:01 -07:00
Alexander Rose
40b6038380
type tweak
2026-05-09 15:43:04 -07:00
Armando Pellegrini
59e16e0187
Fix State.dispose() not invoking transformer dispose for live cells ( #1826 )
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`Transformer.Definition.dispose` is documented as "automatically called
on deleting an object," but `State.dispose()` only disposed its own event
subjects and action manager — it never iterated still-live cells to call
their per-transformer dispose. Cells holding GL buffers, mesh data, etc.
only had their dispose fired on explicit deletion (e.g. `clear()`), so
any consumer that called `plugin.dispose()` without first awaiting
`plugin.clear()` retained the callback chain, the GL buffers it points
at, and any closures captured by it.
In a long-running single-page app where the user navigates between
routes that mount/unmount a Mol* viewer, this leaked roughly 25–50 MB
of process RSS per cycle even with `plugin.dispose()` correctly called.
A 20-cycle E2E mount/unmount harness on a 1AKE structure measured a
+541 MB RSS / +266 MB JS-heap delta in the unconditional-`dispose()`
case; calling `await plugin.clear()` before `plugin.dispose()` halved
the residual leak, confirming the per-cell dispose path was missing on
the unconditional `dispose()` route.
This change walks the cell tree once (post-order via the existing
`StateTree.doPostOrder` helper) and invokes the per-transformer dispose
for every still-live cell, swallowing+warning on errors so a single
faulty transformer can't prevent siblings from cleaning up. The
existing per-cell `dispose` helper is reused for consistency with
`updateNode`/`findDeletes` semantics.
Tests cover: chained transformers, sibling subtrees, throwing-dispose
isolation, and transformers without a dispose definition.
Also adds `useDefineForClassFields: false` to the jest esbuild
transform so tests can construct `State` (the `TransientTree` parameter
property + class field pattern relies on legacy class-field semantics,
which `tsc` honors via `target: es2018` but esbuild's default `esnext`
target does not).
Fixes #1825
Co-authored-by: Armando Pellegrini <tech.tools@boltz.bio >
2026-05-09 22:17:38 +02:00
Alexander Rose
ca5a50bd53
changelog
2026-05-09 12:36:38 -07:00
Alexander Rose
bccf54fabe
avoid extra allocations
2026-05-09 12:36:32 -07:00
Alexander Rose
57a790544c
Add mesoscale representation preset
2026-05-09 12:31:26 -07:00
Alexander Rose
df0669598c
Add presets option to ObjectList param definition
2026-05-09 12:31:11 -07:00
Alexander Rose
fb912036af
Merge branch 'master' of https://github.com/molstar/molstar into pr/corredD/1822
2026-05-09 08:25:26 -07:00
Alexander Rose
9efb5cd126
Add Camera.changed event and rotation/translation setter/getter
2026-05-09 08:24:26 -07:00
Alexander Rose
08a56ad6ab
Instance granularity improvements
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- Add `instanceGranularity: 'auto'` as a memory guard
- Honor `instanceGranularity` in `Visual.getLoci`
2026-05-09 08:10:58 -07:00
Sebastian
2c2bd6adda
tweak wb labels
2026-05-06 16:06:33 +02:00
Sebastian
b010298acb
fix merge
2026-05-06 15:27:45 +02:00
Sebastian
7033a1e0b2
Merge remote-tracking branch 'upstream/master'
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# Conflicts:
# CHANGELOG.md
2026-05-06 15:23:35 +02:00
Sebastian
8ad617acdf
fix refinement
2026-05-06 15:20:34 +02:00
Sebastian
31ab6aa93e
iterator improv
2026-05-06 11:32:50 +02:00
